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Example source tables for VigiBase and MedDRA

Source: R/create_example_tables.R
create_example_tables.Rd

[Stable] Write some example tables as source text/ascii/parquet files.

Usage

create_ex_main_txt(path)

create_ex_sub_txt(path)

create_ex_who_txt(path)

create_ex_meddra_asc(path)

create_ex_main_pq(path)

create_ex_sub_pq(path)

Arguments

path

Character string. A folder on your computer where the tables should be written.

Value

A set of text/ascii files, as received by the Uppsala Monitoring Centre or MedDRA

  • For create_ex_main_txt(), DEMO.txt, DRUG.txt, LINK.txt, FOLLOWUP.txt, ADR.txt, OUT.txt, SRCE.txt, and IND.txt

  • For create_ex_sub_txt(), AgeGroup_Lx.txt, Dechallenge_Lx.txt, Dechallenge2_Lx.txt, Frequency_Lx.txt, Gender_Lx.txt, Notifier_Lx.txt, Outcome_Lx.txt, Rechallenge_Lx.txt, Rechallenge2_Lx.txt, Region_Lx.txt, RepBasis_Lx.txt, ReportType_Lx.txt, RouteOfAdm_Lx.txt, Seriousness_Lx.txt, and SizeUnit_Lx.txt

  • For create_ex_who_txt(), ATC.txt, CCODE.txt, ING.txt, MP.txt, ORG.txt, PF.txt, PP.txt, PRT.txt, PRG.txt, SRCE.txt, STR.txt, SUN.txt, ThG.txt, and Unit-X.txt

  • For create_ex_meddra_asc(), llt.asc, mdhier.asc, smq_content.asc, smq_list.asc

  • For create_ex_main_pq(), demo.parquet, adr.parquet, drug.parquet, link.parquet, srce.parquet, ind.parquet, out.parquet, followup.parquet, suspdup.parquet

  • For create_ex_sub_pq(), agegroup.parquet, dechallenge.parquet, dechallenge2.parquet, frequency.parquet, gender.parquet, notifier.parquet, outcome.parquet, rechallenge.parquet, rechallenge2.parquet, region.parquet, repbasis.parquet, reporttype.parquet, routeofadm.parquet, seriousness.parquet, and sizeunit.parquet

Details

VigiBase tables and MedDRA tables are provided respectively as text files and ascii files. The tb_* family turns them into parquet files. These create_example_* functions are only used to produce example source files to illustrate the tb_* family, and parquet files for the same purpose.

Functions

  • create_ex_sub_txt(): sub txt tables

  • create_ex_who_txt(): WHO txt tables

  • create_ex_meddra_asc(): MedDRA txt tables

  • create_ex_main_pq(): main parquet tables

  • create_ex_sub_pq(): subsidiary parquet tables

See also

tb_vigibase(), tb_who(), tb_meddra()

Examples


path <- paste0(tempdir(), "/crex/")

dir.create(path)

# You may want to use different paths for each type of tables
create_ex_main_txt(path)

create_ex_sub_txt(path)

create_ex_who_txt(path)

create_ex_meddra_asc(path)

create_ex_main_pq(path)

create_ex_sub_pq(path)

# Remove temporary folders when you're done
unlink(path, recursive = TRUE)